lamindb

A data framework for biology.

Core registries.

Artifact()

Datasets & models stored as files, folders, or arrays.

Collection()

Collections of artifacts.

Transform()

Data transformations.

Run()

Runs of transforms.

User()

Users.

Storage()

Storage locations.

ULabel()

Universal labels.

Feature()

Dataset dimensions.

FeatureSet()

Feature sets.

Param()

Parameters of runs & models.

Key functionality.

track([uid, params, new_run, path, transform])

Initiate a run with tracked data lineage.

finish([ignore_non_consecutive])

Finish a tracked run.

connect(slug, **kwargs)

Connect to instance.

Curator()

Dataset curator.

view([n, schema, registries])

View latest metadata state.

save(records[, ignore_conflicts])

Bulk save to registries & storage.

Modules and settings.

integrations

Integrations.

context

Global run context (Context).

settings

Global settings (Settings).

setup

Setup & configure LaminDB.

UPath(*args[, protocol])

Paths: low-level key-value access to files/objects.

core

Core library.